Immune cell type divergence in a basal chordate
Scully TD, Pickett CJ, Gort-Freitas NA, Davidson B, Klein AM.(2025). bioRxiv.
Lineage tracing on transcriptional landscapes links state to fate during differentiation
Weinreb C, Rodriguez-Fraticelli A, Camargo FD, Klein AM. (2020). Science, 14(367): 6479.
Multi-step genomics on single cells and live cultures in sub-nanoliter capsules
Mazelis I, Sun H, Kulkarni A, Torre T, Klein AM. (2025). Genomics. bioRxiv.
IL-17A primes an early progenitor compartment to tune the erythropoietic feedback circuit
Wu QC, Swaminathan A, Winward A, Lalonde L, Hwang Y, Littman N, et al. (2024). bioRxiv.
Fundamental limits on dynamic inference from single-cell snapshots
Weinreb C, Wolock S, Tusi BK, Socolovsky M, Klein AM. (2018). Proceedings of the National Academy of Sciences of the United States of America, 115(10): E2467-E2476.
Single-cell mapping of gene expression landscapes and lineage in the zebrafish embryo
Wagner DE, Weinreb C, Collins ZM, Briggs JA, Megason SG, Klein AM (2018). Science, 360(6392): 981–987.
The dynamics of gene expression in vertebrate embryogenesis at single-cell resolution
Briggs JA, Weinreb C, Wagner DE, Megason S, Peshkin L, Kirschner MW, Klein AM (2018). Science, 360(6392), eaar5780.
Cell state transitions are decoupled from cell division during early embryo development
Kukreja K, Jia BZ, McGeary SE, Patel N, Megason SG, Klein AM (2024). Nature Cell Biology, 26(12): 2035-2045.
A map of signaling responses in the human airway epithelium
McCauley KB, Kukreja K, Tovar Walker AE, Jaffe AB, Klein AM (2024). Cell Systems, 15(4): 307-321.e10.